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OpenFold3-preview Now Deployable on Amazon SageMaker JumpStart

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OpenFold3-preview, an open-source all-atom biomolecular structure prediction model from the OpenFold Consortium and Columbia University's AlQuraishi Lab, can now be deployed from Amazon SageMaker JumpStart, AWS says. It predicts 3D structures of proteins, DNA, RNA, small-molecule ligands and their complexes, running on SageMaker Asynchronous Inference with an invocation timeout of up to one hour and scale-to-zero. The deployable version is OpenFold3 0.4.1 (the of3-p2-155k checkpoint), released under Apache 2.0. SageMaker endpoints are billed per instance-hour while running, including while idle; with scale-to-zero, endpoint instance charges stop once the queue has been empty long enough for the endpoint to scale in, though other charges such as Amazon S3 storage still apply. AWS describes the accompanying code as sample code for experimentation.

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November 14
  1. AWS Machine Learning Blog
    OpenFold3-preview now deployable on Amazon SageMaker JumpStart for biomolecular structure prediction

    OpenFold3-preview, an open source all-atom biomolecular structure prediction model from the OpenFold Consortium and Columbia University's AlQuraishi Lab, can now be deployed from Amazon SageMaker JumpStart. It predicts 3D structures of proteins, DNA, RNA, small-molecule ligands and their complexes, running on SageMaker Asynchronous Inference with up to 1 hour invocation timeout and scale-to-zero. The model is version OpenFold3 0.4.1 (of3-p2-155k checkpoint) under Apache 2.0.

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